STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104247617Mitochondrial outer membrane protein porin of 36 kDa-like. (241 aa)    
Predicted Functional Partners:
LOC104242852
Uncharacterized protein LOC104242852 isoform X1.
    
 0.717
LOC104217509
Mitochondrial import receptor subunit TOM40-1-like.
    
 0.661
LOC104248696
Mitochondrial import receptor subunit TOM40-1-like.
    
 0.661
LOC104246866
Sorting and assembly machinery component 50 homolog B-like.
   
 0.658
LOC104221597
Autophagy protein 5; Required for autophagy.
     
 0.647
LOC104232999
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.
     
 0.635
atpA
ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
   
 0.564
LOC104215021
Uncharacterized protein LOC104215021.
    
 0.561
LOC104226493
Uncharacterized protein LOC104226493.
    
 0.561
LOC104212597
Mitochondrial Rho GTPase.
    
 0.550
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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