STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104249348Putative ubiquitin-like-specific protease 1B. (211 aa)    
Predicted Functional Partners:
LOC104244024
Testis-expressed sequence 10 protein-like.
    
 0.595
LOC104214549
Uncharacterized protein LOC104214549.
    
 0.502
LOC104242675
Protein ROOT INITIATION DEFECTIVE 3.
    
 0.502
LOC104219748
Polynucleotide 5'-hydroxyl-kinase NOL9.
   
 0.499
LOC104214933
Uncharacterized protein LOC104214933.
   
 0.477
LOC104247185
Ribosomal biogenesis protein LAS1L-like.
   
 0.477
LOC104213789
Uncharacterized protein LOC104213789.
    
 0.476
LOC104215420
Small ubiquitin-related modifier.
    
 0.476
LOC104216545
Small ubiquitin-related modifier.
    
 0.476
LOC104229688
Small ubiquitin-related modifier 1-like.
    
 0.476
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.