LOC104218451 protein (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104218451

DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1002 aa)

Predicted Functional Partners:

LOC104213607

0.781

LOC104210648

0.781

LOC104230354

0.781

LOC104249810

0.781

LOC104242124

0.652

LOC104231894

0.483

LOC104221917

0.482

LOC104223858

0.481

LOC104230389

0.481

LOC104238319

0.481

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104210648	LOC104218451	A0A1U7V6N6	A0A1U7VXX6	Protein TPLATE.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.781
LOC104210648	LOC104221917	A0A1U7V6N6	A0A1U7VYC3	Protein TPLATE.	Periodic tryptophan protein 2 homolog.	0.951
LOC104210648	LOC104223858	A0A1U7V6N6	A0A1U7WHF0	Protein TPLATE.	High mobility group B protein 10-like.	0.501
LOC104210648	LOC104230389	A0A1U7V6N6	A0A1U7WVZ6	Protein TPLATE.	High mobility group B protein 15-like isoform X1.	0.501
LOC104210648	LOC104231894	A0A1U7V6N6	A0A1U7WTL3	Protein TPLATE.	Uncharacterized protein LOC104231894.	0.906
LOC104210648	LOC104238319	A0A1U7V6N6	A0A1U7XFV4	Protein TPLATE.	Putative high mobility group B protein 11.	0.501
LOC104210648	LOC104242124	A0A1U7V6N6	A0A1U7Y851	Protein TPLATE.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.604
LOC104213607	LOC104218451	A0A1U7UZK8	A0A1U7VXX6	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.781
LOC104213607	LOC104221917	A0A1U7UZK8	A0A1U7VYC3	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Periodic tryptophan protein 2 homolog.	0.951
LOC104213607	LOC104223858	A0A1U7UZK8	A0A1U7WHF0	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	High mobility group B protein 10-like.	0.501
LOC104213607	LOC104230389	A0A1U7UZK8	A0A1U7WVZ6	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	High mobility group B protein 15-like isoform X1.	0.501
LOC104213607	LOC104231894	A0A1U7UZK8	A0A1U7WTL3	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Uncharacterized protein LOC104231894.	0.906
LOC104213607	LOC104238319	A0A1U7UZK8	A0A1U7XFV4	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Putative high mobility group B protein 11.	0.501
LOC104213607	LOC104242124	A0A1U7UZK8	A0A1U7Y851	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.604
LOC104218451	LOC104210648	A0A1U7VXX6	A0A1U7V6N6	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	Protein TPLATE.	0.781
LOC104218451	LOC104213607	A0A1U7VXX6	A0A1U7UZK8	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.781
LOC104218451	LOC104221917	A0A1U7VXX6	A0A1U7VYC3	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	Periodic tryptophan protein 2 homolog.	0.482
LOC104218451	LOC104223858	A0A1U7VXX6	A0A1U7WHF0	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	High mobility group B protein 10-like.	0.481
LOC104218451	LOC104230354	A0A1U7VXX6	A0A1U7X4P0	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.781
LOC104218451	LOC104230389	A0A1U7VXX6	A0A1U7WVZ6	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	High mobility group B protein 15-like isoform X1.	0.481

page 1 of 5

Server load: low (16%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About