STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEF3Defensin-like protein 1; Belongs to the DEFL family. (76 aa)    
Predicted Functional Partners:
LOC107830314
Flower-specific defensin-like; Belongs to the DEFL family.
  
   
 0.731
LTP1
Non-specific lipid-transfer protein 1; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. Binds cis- unsaturated fatty acids and jasmonic acid with a higher affinity than linear chain fatty acids. Formation of the complex with jasmonic acid results in a conformational change facilitating the LPT1 binding on the elicitin plasma membrane receptor that is known to be involved in plant defense induction. May also play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
  
   
 0.727
LOC107812329
Non-specific lipid-transfer protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
  
   
 0.726
nad1
NADH-ubiquinone oxidoreductase chain 1; Belongs to the complex I subunit 1 family.
      
 0.725
PR1A_TOBAC
Pathogenesis-related protein 1A; Probably involved in the defense reaction of plants against pathogens; Belongs to the CRISP family.
   
  
 0.634
LOC107807832
Pathogenesis-related protein 1B; Belongs to the CRISP family.
   
  
 0.631
LOC107764346
Major pollen allergen Lol p 11-like.
      
 0.600
LOC107782342
Major pollen allergen Lol p 11-like.
      
 0.600
LOC107831756
Regulatory protein NPR1-like.
    
 0.558
PR1B_TOBAC
Pathogenesis-related protein 1B; Probably involved in the defense reaction of plants against pathogens; Belongs to the CRISP family.
   
  
 0.539
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.