STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107758944Transmembrane E3 ubiquitin-protein ligase 1-like isoform X1. (557 aa)    
Predicted Functional Partners:
LOC107766409
Rhomboid-like protein 20.
    
 
 0.752
LOC107766933
Protein N-lysine methyltransferase METTL21A.
    
 
 0.752
LOC107778111
Uncharacterized protein LOC107778111 isoform X1.
    
 
 0.752
LOC107793712
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
 
 0.752
LOC107801720
Protein-lysine methyltransferase METTL21B-like.
    
 
 0.752
LOC107809858
Uncharacterized protein LOC107809858.
    
 
 0.752
LOC107823122
Uncharacterized protein LOC107823122.
    
 
 0.752
LOC107769345
Plant UBX domain-containing protein 10-like.
   
 
 0.620
LOC107799306
Plant UBX domain-containing protein 8-like isoform X1.
   
 
 0.620
LOC107799924
Plant UBX domain-containing protein 10-like.
   
 
 0.620
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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