STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107759687Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. In the C-terminal section; belongs to the pectinesterase family. (556 aa)    
Predicted Functional Partners:
LOC107791025
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 0.861
LOC107813256
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 0.861
LOC107832233
ATP-dependent DNA helicase RecQ-like.
  
 0.861
LOC107819394
DNA repair protein XRCC3 homolog.
    
 0.774
LOC107831770
DNA repair protein XRCC3 homolog.
    
 0.774
LOC107820410
DNA repair protein XRCC2 homolog isoform X1.
   
 0.746
LOC107831709
DNA repair protein XRCC2 homolog isoform X1.
   
 0.746
LOC107787860
Pectate lyase.
  
 
  0.745
LOC107759580
Pectate lyase.
  
 
  0.744
LOC107762441
Meiotic recombination protein DMC1 homolog; Belongs to the RecA family.
   
 0.743
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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