STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107759943Sucrose transport protein SUC3-like isoform X1. (618 aa)    
Predicted Functional Partners:
LOC107771520
Autophagy-related protein.
   
 
 0.580
LOC107787235
Uncharacterized protein LOC107787235.
      
 0.542
LOC107771740
Vesicle transport v-SNARE 12-like.
   
  
 0.523
LOC107831362
Vesicle transport v-SNARE 12-like.
   
  
 0.523
LOC107776568
Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.
   
  
 0.499
LOC107776905
F-box protein At2g26850-like isoform X1.
   
  
 0.439
LOC107801721
LOW QUALITY PROTEIN: F-box protein At2g32560-like.
   
  
 0.439
LOC107785825
Glucose-6-phosphate 1-epimerase; Belongs to the glucose-6-phosphate 1-epimerase family.
      
 0.438
LOC107792473
Glucose-6-phosphate 1-epimerase; Belongs to the glucose-6-phosphate 1-epimerase family.
      
 0.438
LOC107796501
hemK methyltransferase family member 2-like.
      
 0.435
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.