LOC107760968 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107760968

Uncharacterized protein LOC107760968. (296 aa)

Predicted Functional Partners:

LOC107808346

0.526

LOC107772146

0.525

LOC107759581

0.523

LOC107760140

0.522

LOC107815740

0.521

LOC107781268

0.520

LOC107785719

0.516

LOC107790389

0.516

LOC107820005

0.515

LOC107774511

0.513

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107759581	LOC107760140	A0A1S3WZ95	A0A1S3X178	Uncharacterized protein LOC107759581.	Protein CHLOROPLAST IMPORT APPARATUS 2-like.	0.475
LOC107759581	LOC107760968	A0A1S3WZ95	A0A1S3X458	Uncharacterized protein LOC107759581.	Uncharacterized protein LOC107760968.	0.523
LOC107759581	LOC107772146	A0A1S3WZ95	A0A1S3Y4M8	Uncharacterized protein LOC107759581.	BRI1 kinase inhibitor 1-like.	0.444
LOC107759581	LOC107774511	A0A1S3WZ95	A0A1S3YBS0	Uncharacterized protein LOC107759581.	Uncharacterized protein LOC107774511.	0.483
LOC107759581	LOC107781268	A0A1S3WZ95	A0A1S3YZB6	Uncharacterized protein LOC107759581.	Uncharacterized protein LOC107781268 isoform X1.	0.418
LOC107759581	LOC107785719	A0A1S3WZ95	A0A1S3ZE74	Uncharacterized protein LOC107759581.	Protein CHLOROPLAST IMPORT APPARATUS 2-like.	0.456
LOC107759581	LOC107790389	A0A1S3WZ95	A0A1S3ZTV3	Uncharacterized protein LOC107759581.	Uncharacterized protein LOC107790389.	0.481
LOC107759581	LOC107808346	A0A1S3WZ95	A0A1S4BHI9	Uncharacterized protein LOC107759581.	BRI1 kinase inhibitor 1-like.	0.443
LOC107759581	LOC107815740	A0A1S3WZ95	A0A1S4C6J9	Uncharacterized protein LOC107759581.	Uncharacterized protein LOC107815740 isoform X1.	0.484
LOC107759581	LOC107820005	A0A1S3WZ95	A0A1S4CKE0	Uncharacterized protein LOC107759581.	Uncharacterized protein LOC107820005 isoform X1.	0.438
LOC107760140	LOC107759581	A0A1S3X178	A0A1S3WZ95	Protein CHLOROPLAST IMPORT APPARATUS 2-like.	Uncharacterized protein LOC107759581.	0.475
LOC107760140	LOC107760968	A0A1S3X178	A0A1S3X458	Protein CHLOROPLAST IMPORT APPARATUS 2-like.	Uncharacterized protein LOC107760968.	0.522
LOC107760140	LOC107772146	A0A1S3X178	A0A1S3Y4M8	Protein CHLOROPLAST IMPORT APPARATUS 2-like.	BRI1 kinase inhibitor 1-like.	0.501
LOC107760140	LOC107774511	A0A1S3X178	A0A1S3YBS0	Protein CHLOROPLAST IMPORT APPARATUS 2-like.	Uncharacterized protein LOC107774511.	0.518
LOC107760140	LOC107781268	A0A1S3X178	A0A1S3YZB6	Protein CHLOROPLAST IMPORT APPARATUS 2-like.	Uncharacterized protein LOC107781268 isoform X1.	0.426
LOC107760140	LOC107790389	A0A1S3X178	A0A1S3ZTV3	Protein CHLOROPLAST IMPORT APPARATUS 2-like.	Uncharacterized protein LOC107790389.	0.519
LOC107760140	LOC107808346	A0A1S3X178	A0A1S4BHI9	Protein CHLOROPLAST IMPORT APPARATUS 2-like.	BRI1 kinase inhibitor 1-like.	0.499
LOC107760140	LOC107815740	A0A1S3X178	A0A1S4C6J9	Protein CHLOROPLAST IMPORT APPARATUS 2-like.	Uncharacterized protein LOC107815740 isoform X1.	0.506
LOC107760140	LOC107820005	A0A1S3X178	A0A1S4CKE0	Protein CHLOROPLAST IMPORT APPARATUS 2-like.	Uncharacterized protein LOC107820005 isoform X1.	0.428
LOC107760968	LOC107759581	A0A1S3X458	A0A1S3WZ95	Uncharacterized protein LOC107760968.	Uncharacterized protein LOC107759581.	0.523