STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107761401Carboxymethylenebutenolidase homolog. (306 aa)    
Predicted Functional Partners:
LOC107815550
Photosynthetic NDH subunit of subcomplex B 3, chloroplastic-like.
   
  
 0.531
LOC107817402
Photosynthetic NDH subunit of subcomplex B 3, chloroplastic-like isoform X1.
   
  
 0.531
LOC107789852
methyl-CpG-binding domain-containing protein 13-like.
      
 0.511
LOC107824813
Uncharacterized protein LOC107824813 isoform X1.
      
 0.511
LOC107780623
GTP-binding protein At2g22870-like.
      
 0.499
LOC107790698
Pathogen-related protein-like.
      
 0.499
LOC107815781
GTP-binding protein At2g22870-like.
      
 0.499
LOC107777013
Pathogen-related protein-like.
      
 0.499
LOC107766838
Protein ELF4-LIKE 3-like.
   
 
 0.453
LOC107778894
Protein ELF4-LIKE 3-like.
   
 
 0.453
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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