STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107762058Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (827 aa)    
Predicted Functional Partners:
LOC107829799
Transcription initiation factor TFIID subunit 13-like.
    
 0.806
LOC107760504
Mitotic spindle checkpoint protein MAD2 isoform X1.
   
 0.784
LOC107764094
Mitotic spindle checkpoint protein MAD2-like.
   
 0.784
LOC107810036
Transcription initiation factor TFIID subunit 9-like.
    
 0.768
LOC107831428
Transcription initiation factor TFIID subunit 9-like.
    
 0.768
LOC107811791
Transcription initiation factor TFIID subunit 2-like isoform X1.
    
 0.762
LOC107824526
Transcription initiation factor TFIID subunit 2-like isoform X1.
    
 0.762
LOC107777012
Anaphase-promoting complex subunit 6-like.
   
 0.758
LOC107790682
Anaphase-promoting complex subunit 6-like isoform X1.
   
 0.758
LOC107771175
Anaphase-promoting complex subunit 4-like isoform X1.
    
 0.749
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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