STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107763164Protein BUD31 homolog 2-like. (114 aa)    
Predicted Functional Partners:
LOC107812596
pre-mRNA-splicing factor ISY1 homolog.
   
 0.961
LOC107813591
pre-mRNA-splicing factor ISY1 homolog.
   
 0.961
LOC107763122
pre-mRNA-splicing factor SYF1-like.
    
 0.956
LOC107819808
pre-mRNA-splicing factor SYF1-like.
    
 0.956
LOC107778796
PHD finger-like domain-containing protein 5B.
   
 
 0.911
LOC107769380
Splicing factor subunit; Belongs to the SF3B5 family.
   
 
 0.906
LOC107759280
Zinc finger CCCH domain-containing protein 49-like.
   
 0.887
LOC107802168
Zinc finger CCCH domain-containing protein 49-like isoform X1.
   
 0.887
LOC107807944
Zinc finger CCCH domain-containing protein 49-like.
   
 0.887
LOC107810796
Zinc finger CCCH domain-containing protein 49-like.
   
 0.887
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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