STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107763845Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily. (290 aa)    
Predicted Functional Partners:
ptpkis1
Phosphoglucan phosphatase DSP4, amyloplastic-like isoform X2.
    
 0.608
LOC107766450
Phosphoglucan phosphatase LSF1, chloroplastic-like.
    
 0.608
LOC107775688
Phosphoglucan phosphatase DSP4, amyloplastic-like isoform X1.
    
 0.608
LOC107801246
Phosphoglucan phosphatase LSF1, chloroplastic-like.
    
 0.608
LOC107812930
Phosphoglucan phosphatase DSP4, amyloplastic-like.
    
 0.608
LOC107826656
Protein TIME FOR COFFEE-like.
   
 0.501
LOC107794727
Protein LST8 homolog.
    
 0.489
LOC107817068
Calcineurin B-like protein 10.
    
 0.406
LOC107831597
Calcineurin B-like protein 10.
    
 0.406
LOC107769311
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.
   
0.401
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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