STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107764282Zinc transport protein ZntB-like. (256 aa)    
Predicted Functional Partners:
LOC107761187
Sirohydrochlorin ferrochelatase, chloroplastic-like isoform X1.
  
  
 0.599
LOC107789392
Sirohydrochlorin ferrochelatase, chloroplastic-like.
  
  
 0.599
LOC107769457
Bifunctional riboflavin kinase/FMN phosphatase-like.
     
 0.557
LOC107779761
Bifunctional riboflavin kinase/FMN phosphatase-like.
     
 0.557
LOC107828624
Urea-proton symporter DUR3; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
      
 0.499
LOC107787718
Tryptophan synthase alpha chain-like; Belongs to the TrpA family.
   
  
 0.498
LOC107814357
Tryptophan synthase alpha chain-like; Belongs to the TrpA family.
   
  
 0.498
LOC107823799
Tryptophan synthase alpha chain-like; Belongs to the TrpA family.
   
  
 0.498
LOC107782237
Phosphomethylpyrimidine synthase, chloroplastic-like.
     
 0.491
LOC107810498
Phosphomethylpyrimidine synthase, chloroplastic.
     
 0.491
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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