STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107764848UPF0047 protein YjbQ-like. (189 aa)    
Predicted Functional Partners:
LOC107787854
Putative ribosome biogenesis GTPase RsgA.
    
  0.705
LOC107788041
Putative ribosome biogenesis GTPase RsgA.
    
  0.705
LOC107812204
Putative ribosome biogenesis GTPase RsgA.
    
  0.705
LOC107760555
Probable aminopyrimidine aminohydrolase, mitochondrial.
   
 
 0.694
LOC107762103
Probable aminopyrimidine aminohydrolase, mitochondrial.
   
 
 0.694
LOC107767671
Thiamine biosynthetic bifunctional enzyme TH1, chloroplastic-like isoform X1.
   
 
 0.694
LOC107768004
Probable aminopyrimidine aminohydrolase, mitochondrial.
   
 
 0.694
LOC107797028
Probable aminopyrimidine aminohydrolase, mitochondrial isoform X1.
   
 
 0.694
LOC107799284
Probable aminopyrimidine aminohydrolase, mitochondrial.
   
 
 0.694
LOC107817826
Thiamine biosynthetic bifunctional enzyme TH1, chloroplastic-like.
   
 
 0.694
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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