LOC107765405 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107765405

Uncharacterized protein LOC107765405. (810 aa)

Predicted Functional Partners:

LOC107781175

0.651

LOC107811763

0.651

LOC107822929

0.651

LOC107764273

0.565

LOC107779834

0.565

LOC107793862

0.565

LOC107803795

0.565

LOC107817083

0.565

LOC107765377

0.509

LOC107766483

0.509

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107764273	LOC107765377	A0A1S3XEM4	A0A1S3XHQ7	Heat shock 70 kDa protein, mitochondrial-like.	Heat shock 70 kDa protein 16-like.	0.790
LOC107764273	LOC107765405	A0A1S3XEM4	A0A1S3XHY1	Heat shock 70 kDa protein, mitochondrial-like.	Uncharacterized protein LOC107765405.	0.565
LOC107764273	LOC107766483	A0A1S3XEM4	A0A1S3XL99	Heat shock 70 kDa protein, mitochondrial-like.	Heat shock 70 kDa protein 15-like.	0.825
LOC107764273	LOC107781175	A0A1S3XEM4	A0A1S3YZP9	Heat shock 70 kDa protein, mitochondrial-like.	Heat shock 70 kDa protein 17-like.	0.882
LOC107764273	LOC107811763	A0A1S3XEM4	A0A1S4BTN3	Heat shock 70 kDa protein, mitochondrial-like.	Heat shock 70 kDa protein 17.	0.901
LOC107764273	LOC107822929	A0A1S3XEM4	A0A1S4CV52	Heat shock 70 kDa protein, mitochondrial-like.	Heat shock 70 kDa protein 17-like.	0.906
LOC107765377	LOC107764273	A0A1S3XHQ7	A0A1S3XEM4	Heat shock 70 kDa protein 16-like.	Heat shock 70 kDa protein, mitochondrial-like.	0.790
LOC107765377	LOC107765405	A0A1S3XHQ7	A0A1S3XHY1	Heat shock 70 kDa protein 16-like.	Uncharacterized protein LOC107765405.	0.509
LOC107765377	LOC107779834	A0A1S3XHQ7	A0A1S3YV22	Heat shock 70 kDa protein 16-like.	Stromal 70 kDa heat shock-related protein, chloroplastic-like; Belongs to the heat shock protein 70 family.	0.717
LOC107765377	LOC107793862	A0A1S3XHQ7	A0A1S4A548	Heat shock 70 kDa protein 16-like.	Stromal 70 kDa heat shock-related protein, chloroplastic-like; Belongs to the heat shock protein 70 family.	0.717
LOC107765377	LOC107803795	A0A1S3XHQ7	A0A1S4B2J0	Heat shock 70 kDa protein 16-like.	Stromal 70 kDa heat shock-related protein, chloroplastic-like; Belongs to the heat shock protein 70 family.	0.717
LOC107765377	LOC107817083	A0A1S3XHQ7	A0A1S4CB32	Heat shock 70 kDa protein 16-like.	Stromal 70 kDa heat shock-related protein, chloroplastic; Belongs to the heat shock protein 70 family.	0.717
LOC107765405	LOC107764273	A0A1S3XHY1	A0A1S3XEM4	Uncharacterized protein LOC107765405.	Heat shock 70 kDa protein, mitochondrial-like.	0.565
LOC107765405	LOC107765377	A0A1S3XHY1	A0A1S3XHQ7	Uncharacterized protein LOC107765405.	Heat shock 70 kDa protein 16-like.	0.509
LOC107765405	LOC107766483	A0A1S3XHY1	A0A1S3XL99	Uncharacterized protein LOC107765405.	Heat shock 70 kDa protein 15-like.	0.509
LOC107765405	LOC107779834	A0A1S3XHY1	A0A1S3YV22	Uncharacterized protein LOC107765405.	Stromal 70 kDa heat shock-related protein, chloroplastic-like; Belongs to the heat shock protein 70 family.	0.565
LOC107765405	LOC107781175	A0A1S3XHY1	A0A1S3YZP9	Uncharacterized protein LOC107765405.	Heat shock 70 kDa protein 17-like.	0.651
LOC107765405	LOC107793862	A0A1S3XHY1	A0A1S4A548	Uncharacterized protein LOC107765405.	Stromal 70 kDa heat shock-related protein, chloroplastic-like; Belongs to the heat shock protein 70 family.	0.565
LOC107765405	LOC107803795	A0A1S3XHY1	A0A1S4B2J0	Uncharacterized protein LOC107765405.	Stromal 70 kDa heat shock-related protein, chloroplastic-like; Belongs to the heat shock protein 70 family.	0.565
LOC107765405	LOC107811763	A0A1S3XHY1	A0A1S4BTN3	Uncharacterized protein LOC107765405.	Heat shock 70 kDa protein 17.	0.651