STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107766839Pentatricopeptide repeat-containing protein At2g41720-like. (831 aa)    
Predicted Functional Partners:
rps12-2
Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
    
 
 0.588
LOC107774218
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
  
 
  0.575
LOC107827053
Uncharacterized protein LOC107827053.
  
 
  0.561
rps12
Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
    
 
 0.506
LOC107782999
Uncharacterized protein LOC107782999.
      
 0.503
LOC107790898
Uncharacterized protein LOC107790898.
      
 0.503
LOC107776021
Uncharacterized protein LOC107776021.
  
     0.478
LOC107830031
Uncharacterized protein LOC107830031.
  
     0.477
LOC107770721
Uncharacterized protein LOC107770721.
  
    0.467
LOC107765712
Sodium/hydrogen exchanger 5-like.
  
    0.466
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.