LOC107766822 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107766822

Uncharacterized protein LOC107766822 isoform X1. (109 aa)

Predicted Functional Partners:

LOC107760894

0.509

LOC107809363

0.508

LOC107769809

0.505

LOC107774267

0.505

LOC107803511

0.505

LOC107759574

0.504

LOC107776935

0.503

LOC107805557

0.502

LOC107766810

0.498

LOC107825782

0.497

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107759574	LOC107760894	A0A1S3WZH0	A0A1S3X3V4	Uncharacterized GPI-anchored protein At1g61900-like isoform X1.	Early nodulin-like protein 3.	0.504
LOC107759574	LOC107766810	A0A1S3WZH0	A0A1S3XML9	Uncharacterized GPI-anchored protein At1g61900-like isoform X1.	Early nodulin-like protein 3.	0.486
LOC107759574	LOC107766822	A0A1S3WZH0	A0A1S3XMM9	Uncharacterized GPI-anchored protein At1g61900-like isoform X1.	Uncharacterized protein LOC107766822 isoform X1.	0.504
LOC107759574	LOC107769809	A0A1S3WZH0	A0A1S3XXF7	Uncharacterized GPI-anchored protein At1g61900-like isoform X1.	Uncharacterized protein LOC107769809.	0.524
LOC107759574	LOC107774267	A0A1S3WZH0	A0A1S3YAW5	Uncharacterized GPI-anchored protein At1g61900-like isoform X1.	Early nodulin-like protein 3.	0.494
LOC107759574	LOC107776935	A0A1S3WZH0	A0A1S3YJU2	Uncharacterized GPI-anchored protein At1g61900-like isoform X1.	Uncharacterized protein LOC107776935.	0.542
LOC107759574	LOC107803511	A0A1S3WZH0	A0A1S4B1S6	Uncharacterized GPI-anchored protein At1g61900-like isoform X1.	NAC transcription factor 56-like.	0.539
LOC107759574	LOC107805557	A0A1S3WZH0	A0A1S4B8A4	Uncharacterized GPI-anchored protein At1g61900-like isoform X1.	Uncharacterized protein LOC107805557.	0.519
LOC107759574	LOC107825782	A0A1S3WZH0	A0A1S4D4H9	Uncharacterized GPI-anchored protein At1g61900-like isoform X1.	Uncharacterized protein LOC107825782.	0.537
LOC107760894	LOC107759574	A0A1S3X3V4	A0A1S3WZH0	Early nodulin-like protein 3.	Uncharacterized GPI-anchored protein At1g61900-like isoform X1.	0.504
LOC107760894	LOC107766822	A0A1S3X3V4	A0A1S3XMM9	Early nodulin-like protein 3.	Uncharacterized protein LOC107766822 isoform X1.	0.509
LOC107760894	LOC107769809	A0A1S3X3V4	A0A1S3XXF7	Early nodulin-like protein 3.	Uncharacterized protein LOC107769809.	0.496
LOC107760894	LOC107776935	A0A1S3X3V4	A0A1S3YJU2	Early nodulin-like protein 3.	Uncharacterized protein LOC107776935.	0.488
LOC107760894	LOC107803511	A0A1S3X3V4	A0A1S4B1S6	Early nodulin-like protein 3.	NAC transcription factor 56-like.	0.512
LOC107760894	LOC107805557	A0A1S3X3V4	A0A1S4B8A4	Early nodulin-like protein 3.	Uncharacterized protein LOC107805557.	0.493
LOC107760894	LOC107809363	A0A1S3X3V4	A0A1S4BKV1	Early nodulin-like protein 3.	Uncharacterized GPI-anchored protein At1g61900-like.	0.502
LOC107760894	LOC107825782	A0A1S3X3V4	A0A1S4D4H9	Early nodulin-like protein 3.	Uncharacterized protein LOC107825782.	0.529
LOC107766810	LOC107759574	A0A1S3XML9	A0A1S3WZH0	Early nodulin-like protein 3.	Uncharacterized GPI-anchored protein At1g61900-like isoform X1.	0.486
LOC107766810	LOC107766822	A0A1S3XML9	A0A1S3XMM9	Early nodulin-like protein 3.	Uncharacterized protein LOC107766822 isoform X1.	0.498
LOC107766810	LOC107769809	A0A1S3XML9	A0A1S3XXF7	Early nodulin-like protein 3.	Uncharacterized protein LOC107769809.	0.477