STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107767690Centromere-associated protein E-like. (1808 aa)    
Predicted Functional Partners:
LOC107789286
Paramyosin-like.
    
 0.641
LOC107766836
Uncharacterized protein LOC107766836 isoform X1.
  
 
  0.494
LOC107806046
Uncharacterized protein LOC107806046 isoform X1.
  
 
  0.492
LOC107817617
Squamosa promoter-binding-like protein 9.
  
 
 
 0.466
LOC107817110
Squamosa promoter-binding-like protein 9.
  
 
 
 0.458
LOC107769779
Uncharacterized protein At4g10930-like isoform X1.
  
     0.455
LOC107787896
RING-type E3 ubiquitin transferase.
  
 
 
 0.439
LOC107796870
RING-type E3 ubiquitin transferase.
  
 
 
 0.439
LOC107823315
Uncharacterized protein LOC107823315; Belongs to the PI3/PI4-kinase family.
  
  
 0.438
LOC107779596
Uncharacterized protein LOC107779596.
  
  
 0.436
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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