STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107769230Ribose-phosphate pyrophosphokinase 4-like. (402 aa)    
Predicted Functional Partners:
LOC107765924
Uridine 5'-monophosphate synthase.
  
 
 0.683
LOC107794649
Uridine 5'-monophosphate synthase-like.
  
 
 0.683
PYR5-6
Orotidine 5'-phosphate decarboxylase; In the N-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
  
 
 0.683
LOC107768671
Ribose-phosphate pyrophosphokinase 2, chloroplastic-like.
  
  
 0.658
LOC107761526
Trigger factor-like protein TIG, Chloroplastic.
   
  
 0.655
LOC107821936
Trigger factor-like protein TIG, Chloroplastic.
   
  
 0.655
LOC107762224
Ribose-phosphate pyrophosphokinase 1-like.
  
  
 0.654
LOC107792811
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
  
 
 0.652
LOC107794251
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
  
 
 0.652
LOC107822762
50S ribosomal protein L25 isoform X1.
  
  
 0.652
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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