STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107769794Zinc finger protein Xfin-like. (442 aa)    
Predicted Functional Partners:
LOC107827077
21 kDa protein-like.
  
     0.499
LOC107774436
21 kDa protein-like.
  
     0.494
LOC107772821
Transcriptional regulator SUPERMAN-like.
  
   
 0.488
LOC107794794
Transcription factor TCP8-like.
  
 
   0.486
LOC107831606
Transcription factor TCP8-like.
  
 
   0.486
LOC107821927
21 kDa protein-like.
  
     0.480
LOC107823904
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
  
     0.474
LOC107776849
Uncharacterized protein LOC107776849.
  
   
 0.472
LOC107812364
Transcriptional regulator SUPERMAN-like.
  
   
 0.468
LOC107826150
UPF0496 protein At3g49070-like.
  
     0.465
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.