STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107770040Zinc finger CCCH domain-containing protein 25-like. (345 aa)    
Predicted Functional Partners:
LOC107820443
BUD13 homolog.
   
 0.982
LOC107820758
BUD13 homolog isoform X1.
   
 0.982
LOC107778796
PHD finger-like domain-containing protein 5B.
    
 0.981
LOC107781120
FHA domain-containing protein DDL-like isoform X2.
   
 0.981
LOC107783579
FHA domain-containing protein DDL.
   
 0.981
LOC107769132
Splicing factor 3B subunit 1-like.
    
 0.980
LOC107822419
Splicing factor 3A subunit 2-like.
    
 0.979
LOC107769380
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.978
LOC107817263
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.966
LOC107771044
Splicing factor 3B subunit 2-like.
    
 0.959
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.