STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107769953BTB/POZ domain-containing protein At4g08455-like. (290 aa)    
Predicted Functional Partners:
LOC107788751
Acetyltransferase At1g77540-like.
      
 0.545
LOC107813917
Acetyltransferase At1g77540-like.
      
 0.545
LOC107798122
Uncharacterized protein LOC107798122.
      
 0.480
LOC107816985
Uncharacterized protein LOC107816985.
      
 0.480
LOC107768960
cullin-3A-like; Belongs to the cullin family.
   
 0.463
LOC107780807
cullin-3A-like; Belongs to the cullin family.
   
 0.463
LOC107796207
cullin-3A-like; Belongs to the cullin family.
   
 0.463
LOC107814473
cullin-3A-like; Belongs to the cullin family.
   
 0.463
LOC107805666
26S proteasome non-ATPase regulatory subunit 7 homolog A.
   
 
  0.458
LOC107759321
Cullin-1; Belongs to the cullin family.
   
 0.452
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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