STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107770950Uncharacterized protein LOC107770950. (548 aa)    
Predicted Functional Partners:
LOC107765376
Uncharacterized protein LOC107765376.
  
     0.498
LOC107813543
Uncharacterized protein LOC107813543.
  
     0.497
LOC107763554
Uncharacterized protein LOC107763554.
  
     0.489
LOC107805379
Uncharacterized protein LOC107805379.
  
     0.488
LOC107787814
Transcription factor TCP20-like.
  
     0.474
LOC107808239
Transcription factor TCP20-like isoform X1.
  
     0.473
LOC107800532
Cellulose synthase A catalytic subunit 6 [UDP-forming]-like.
  
     0.463
LOC107805417
Transcription factor TCP20-like.
  
     0.459
LOC107795420
Transcription factor TCP20-like.
  
     0.452
LOC107785490
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
     0.448
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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