STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107771397DExH-box ATP-dependent RNA helicase DExH12-like. (143 aa)    
Predicted Functional Partners:
LOC107825164
Small nuclear ribonucleoprotein-associated protein.
   
 0.946
LOC107769132
Splicing factor 3B subunit 1-like.
   
 
 0.920
LOC107772881
116 kDa U5 small nuclear ribonucleoprotein component-like.
   
 0.912
LOC107773820
116 kDa U5 small nuclear ribonucleoprotein component-like.
   
 0.912
LOC107800224
116 kDa U5 small nuclear ribonucleoprotein component-like.
   
 0.912
LOC107760740
pre-mRNA-processing-splicing factor 8-like.
   
 0.909
LOC107762115
pre-mRNA-processing-splicing factor 8-like.
   
 0.909
LOC107793846
pre-mRNA-processing-splicing factor 8-like.
   
 0.909
LOC107813473
pre-mRNA-processing-splicing factor 8.
   
 0.909
LOC107826367
pre-mRNA-processing-splicing factor 8-like.
   
 0.909
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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