LOC107772269 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107772269

Coiled-coil domain-containing protein SCD2-like. (90 aa)

Predicted Functional Partners:

LOC107811481

0.662

LOC107772888

0.652

LOC107804816

0.651

LOC107773914

0.603

LOC107776829

0.603

LOC107803331

0.603

LOC107809205

0.603

LOC107810053

0.603

LOC107763721

0.601

LOC107796324

0.601

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107763721	LOC107772269	A0A1S3XCZ6	A0A1S3Y4U5	Uncharacterized protein LOC107763721.	Coiled-coil domain-containing protein SCD2-like.	0.601
LOC107763721	LOC107796324	A0A1S3XCZ6	A0A1S4AD80	Uncharacterized protein LOC107763721.	AUGMIN subunit 5-like.	0.494
LOC107763721	LOC107804816	A0A1S3XCZ6	A0A1S4B616	Uncharacterized protein LOC107763721.	AUGMIN subunit 5-like.	0.520
LOC107772269	LOC107763721	A0A1S3Y4U5	A0A1S3XCZ6	Coiled-coil domain-containing protein SCD2-like.	Uncharacterized protein LOC107763721.	0.601
LOC107772269	LOC107772888	A0A1S3Y4U5	A0A1S3Y782	Coiled-coil domain-containing protein SCD2-like.	DENN domain and WD repeat-containing protein SCD1-like isoform X1.	0.652
LOC107772269	LOC107773914	A0A1S3Y4U5	A0A1S3Y9R2	Coiled-coil domain-containing protein SCD2-like.	NAD-dependent protein deacetylase SRT1-like.	0.603
LOC107772269	LOC107776829	A0A1S3Y4U5	A0A1S3YJM9	Coiled-coil domain-containing protein SCD2-like.	NAD-dependent protein deacylase; NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues; Belongs to the sirtuin family. Class II subfamily.	0.603
LOC107772269	LOC107796324	A0A1S3Y4U5	A0A1S4AD80	Coiled-coil domain-containing protein SCD2-like.	AUGMIN subunit 5-like.	0.601
LOC107772269	LOC107803331	A0A1S3Y4U5	A0A1S4B0Y7	Coiled-coil domain-containing protein SCD2-like.	NAD-dependent protein deacylase; NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues; Belongs to the sirtuin family. Class II subfamily.	0.603
LOC107772269	LOC107804816	A0A1S3Y4U5	A0A1S4B616	Coiled-coil domain-containing protein SCD2-like.	AUGMIN subunit 5-like.	0.651
LOC107772269	LOC107809205	A0A1S3Y4U5	A0A1S4BKB1	Coiled-coil domain-containing protein SCD2-like.	NAD-dependent protein deacetylase SRT1-like.	0.603
LOC107772269	LOC107810053	A0A1S3Y4U5	A0A1S4BN26	Coiled-coil domain-containing protein SCD2-like.	LOW QUALITY PROTEIN: NAD-dependent protein deacetylase SRT1.	0.603
LOC107772269	LOC107811481	A0A1S3Y4U5	A0A1S4BSM9	Coiled-coil domain-containing protein SCD2-like.	DENN domain and WD repeat-containing protein SCD1 isoform X1.	0.662
LOC107772888	LOC107772269	A0A1S3Y782	A0A1S3Y4U5	DENN domain and WD repeat-containing protein SCD1-like isoform X1.	Coiled-coil domain-containing protein SCD2-like.	0.652
LOC107773914	LOC107772269	A0A1S3Y9R2	A0A1S3Y4U5	NAD-dependent protein deacetylase SRT1-like.	Coiled-coil domain-containing protein SCD2-like.	0.603
LOC107773914	LOC107776829	A0A1S3Y9R2	A0A1S3YJM9	NAD-dependent protein deacetylase SRT1-like.	NAD-dependent protein deacylase; NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues; Belongs to the sirtuin family. Class II subfamily.	0.549
LOC107773914	LOC107803331	A0A1S3Y9R2	A0A1S4B0Y7	NAD-dependent protein deacetylase SRT1-like.	NAD-dependent protein deacylase; NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues; Belongs to the sirtuin family. Class II subfamily.	0.549
LOC107776829	LOC107772269	A0A1S3YJM9	A0A1S3Y4U5	NAD-dependent protein deacylase; NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues; Belongs to the sirtuin family. Class II subfamily.	Coiled-coil domain-containing protein SCD2-like.	0.603
LOC107776829	LOC107773914	A0A1S3YJM9	A0A1S3Y9R2	NAD-dependent protein deacylase; NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues; Belongs to the sirtuin family. Class II subfamily.	NAD-dependent protein deacetylase SRT1-like.	0.549
LOC107776829	LOC107809205	A0A1S3YJM9	A0A1S4BKB1	NAD-dependent protein deacylase; NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues; Belongs to the sirtuin family. Class II subfamily.	NAD-dependent protein deacetylase SRT1-like.	0.598