STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107773077Pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like. (347 aa)    
Predicted Functional Partners:
LOC107811108
Pentatricopeptide repeat-containing protein At5g16420, mitochondrial-like.
  
     0.512
nad1
NADH-ubiquinone oxidoreductase chain 1; Belongs to the complex I subunit 1 family.
   
 
 0.471
nad4
NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
   
  
 0.437
LOC107820843
OTU domain-containing protein At3g57810-like.
      
 0.432
LOC107821917
OTU domain-containing protein At3g57810-like.
      
 0.432
LOC107765362
Regulation of nuclear pre-mRNA domain-containing protein 1B-like.
      
 0.429
LOC107830176
UPF0400 protein C337.03-like.
      
 0.429
LOC107818256
Putative pentatricopeptide repeat-containing protein At1g68930.
  
     0.412
LOC107770639
Putative pentatricopeptide repeat-containing protein At3g23330.
  
     0.401
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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