STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107775248Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1. (700 aa)    
Predicted Functional Partners:
LOC107772482
U3 small nucleolar ribonucleoprotein protein IMP3-like.
   
  0.861
LOC107790640
DEAD-box ATP-dependent RNA helicase 36-like; Belongs to the DEAD box helicase family.
   
 0.857
LOC107827612
DEAD-box ATP-dependent RNA helicase 36-like; Belongs to the DEAD box helicase family.
   
 0.857
LOC107779177
Something about silencing protein 10-like isoform X1.
   
 0.855
LOC107811333
Something about silencing protein 10-like isoform X1.
   
 0.855
LOC107815595
U3 small nucleolar RNA-associated protein 25-like.
   
 0.850
LOC107821000
U3 small nucleolar RNA-associated protein 25-like.
   
 0.850
LOC107767977
pre-mRNA-splicing factor SLU7-like.
    
 0.843
LOC107824087
pre-mRNA-splicing factor SLU7-like.
    
 0.843
LOC107786751
pre-mRNA-splicing factor syf2-like.
    
 0.839
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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