STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107775943Protein Jade-1-like. (308 aa)    
Predicted Functional Partners:
LOC107821458
Histone acetyltransferase of the MYST family 1-like.
    
 0.945
LOC107824260
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.945
LOC107760102
Chromatin modification-related protein MEAF6-like.
    
 0.937
LOC107810009
Chromatin modification-related protein MEAF6-like isoform X1.
    
 0.937
LOC107779624
Chromatin modification-related protein MEAF6-like.
    
 0.880
LOC107817832
Chromatin modification-related protein MEAF6-like.
    
 0.880
LOC107779083
Uncharacterized protein LOC107779083.
   
 
 0.451
LOC107796767
Uncharacterized protein LOC107796767.
   
 
 0.451
LOC107761191
Replication factor C subunit 1.
    
 
 0.401
LOC107763539
Replication factor C subunit 1.
    
 
 0.401
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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