STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107776298REF/SRPP-like protein At3g05500. (226 aa)    
Predicted Functional Partners:
LOC107817892
Uncharacterized protein LOC107817892.
  
     0.510
LOC107802045
NTA15 protein.
  
     0.507
LOC107797515
CBS domain-containing protein CBSCBSPB5-like isoform X1.
  
     0.490
LOC107780535
APO protein 2, chloroplastic-like.
  
     0.489
LOC107826359
Protein kinase APK1B, chloroplastic-like.
  
     0.485
LOC107783642
Uncharacterized protein LOC107783642.
  
     0.482
LOC107778857
Uncharacterized protein LOC107778857.
  
     0.478
LOC107788394
APO protein 2, chloroplastic-like.
  
     0.471
LOC107807701
Putative expansin-B2.
  
     0.468
LOC107807695
Transcription factor TCP4-like.
  
     0.468
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.