STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107777590Psoralen synthase-like. (287 aa)    
Predicted Functional Partners:
LOC107770222
GPI mannosyltransferase 1; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis. Transfers the first alpha-1,4-mannose to GlcN- acyl-PI during GPI precursor assembly.
   
  
 0.461
LOC107776749
GPI mannosyltransferase 1; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis. Transfers the first alpha-1,4-mannose to GlcN- acyl-PI during GPI precursor assembly.
   
  
 0.461
LOC107798121
E3 ubiquitin-protein ligase RNF182-like.
  
     0.440
LOC107799045
E3 ubiquitin-protein ligase RNF182-like.
  
     0.434
LOC107772875
Pathogen-related protein-like.
      
 0.408
LOC107775429
Cysteine proteinase 3-like; Belongs to the peptidase C1 family.
      
 0.408
LOC107779938
Cysteine proteinase 3-like; Belongs to the peptidase C1 family.
      
 0.408
LOC107818105
Cysteine proteinase 3-like; Belongs to the peptidase C1 family.
      
 0.408
LOC107826026
Pathogen-related protein-like isoform X3.
      
 0.408
LOC107828189
Pathogen-related protein-like isoform X1.
      
 0.408
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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