STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107778072Uncharacterized protein LOC107778072. (220 aa)    
Predicted Functional Partners:
LOC107766464
calumenin-A-like.
      
 0.509
LOC107798723
calumenin-A-like.
      
 0.509
LOC107798403
Cleavage stimulation factor subunit 77-like isoform X1.
      
 0.504
LOC107827044
Cleavage stimulation factor subunit 77-like isoform X1.
      
 0.504
LOC107808858
Cleavage stimulating factor 64.
      
 0.503
LOC107811588
Cleavage stimulating factor 64-like isoform X1.
      
 0.503
LOC107818960
Syntaxin-132-like isoform X1.
      
 0.499
LOC107829653
Syntaxin-132-like isoform X1.
      
 0.499
LOC107825187
Uncharacterized protein LOC107825187.
  
     0.459
LOC107830429
Uncharacterized protein LOC107830429.
  
     0.455
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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