STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107779808Uncharacterized protein LOC107779808. (424 aa)    
Predicted Functional Partners:
LOC107815531
Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic.
  
     0.527
LOC107772647
Pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like.
      
 0.511
LOC107803983
Pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like.
      
 0.511
LOC107786496
Ankyrin repeat domain-containing protein EMB506, chloroplastic-like.
      
 0.503
LOC107807340
Ankyrin repeat domain-containing protein EMB506, chloroplastic-like isoform X1.
      
 0.503
LOC107804426
Uncharacterized protein LOC107804426.
      
 0.502
LOC107813004
Uncharacterized protein LOC107813004.
      
 0.502
LOC107797733
Replication factor C subunit 3.
      
 0.489
LOC107830832
Replication factor C subunit 3.
      
 0.489
LOC107814056
Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic.
  
    0.488
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.