STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107780387Protein UXT homolog. (146 aa)    
Predicted Functional Partners:
LOC107774899
Prefoldin subunit 6-like.
   
 
 0.911
LOC107777113
Prefoldin subunit 6-like.
   
 
 0.911
LOC107774632
Probable prefoldin subunit 2.
    
 
 0.856
LOC107823456
Probable prefoldin subunit 2.
    
 
 0.856
LOC107798550
RNA polymerase II subunit 5-mediating protein homolog.
    
 
 0.847
LOC107808448
RNA polymerase II subunit 5-mediating protein homolog isoform X1.
    
 
 0.847
LOC107810662
RNA polymerase II subunit 5-mediating protein homolog isoform X1.
    
 
 0.847
LOC107767865
RNA polymerase II-associated protein 3 isoform X1.
    
 
 0.842
LOC107830436
RNA polymerase II-associated protein 3-like.
    
 
 0.842
LOC107772379
RuvB-like helicase; Belongs to the RuvB family.
   
 
 0.811
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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