LOC107781030 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107781030

Sulfite oxidase-like. (393 aa)

Predicted Functional Partners:

SIR1

0.961

LOC107787200

0.957

LOC107768720

0.948

LOC107785151

0.948

LOC107789753

0.948

LOC107799658

0.948

LOC107801230

0.948

LOC107811452

0.948

LOC107787523

0.937

LOC107787829

0.937

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107768720	LOC107781030	A0A1S3XTZ5	A0A1S3YYI0	5'-adenylylsulfate reductase 3, chloroplastic-like.	Sulfite oxidase-like.	0.948
LOC107768720	LOC107785151	A0A1S3XTZ5	A0A1S3ZBP2	5'-adenylylsulfate reductase 3, chloroplastic-like.	Nitrate reductase [NADH] 2-like.	0.969
LOC107768720	LOC107787200	A0A1S3XTZ5	A0A1S3ZIR3	5'-adenylylsulfate reductase 3, chloroplastic-like.	Sulfite reductase 1 [ferredoxin], chloroplastic-like.	0.994
LOC107768720	LOC107787523	A0A1S3XTZ5	A0A076L2G1	5'-adenylylsulfate reductase 3, chloroplastic-like.	Sulfurtransferase.	0.889
LOC107768720	LOC107787829	A0A1S3XTZ5	A0A1S3ZKL5	5'-adenylylsulfate reductase 3, chloroplastic-like.	Sulfurtransferase.	0.889
LOC107768720	LOC107789753	A0A1S3XTZ5	A0A1S3ZRY9	5'-adenylylsulfate reductase 3, chloroplastic-like.	5'-adenylylsulfate reductase 3, chloroplastic-like.	0.597
LOC107768720	LOC107799658	A0A1S3XTZ5	A0A1S4AP83	5'-adenylylsulfate reductase 3, chloroplastic-like.	5'-adenylylsulfate reductase 3, chloroplastic-like isoform X1.	0.598
LOC107768720	LOC107801230	A0A1S3XTZ5	A0A1S4ATW2	5'-adenylylsulfate reductase 3, chloroplastic-like.	5'-adenylylsulfate reductase 1, chloroplastic-like.	0.598
LOC107768720	LOC107811452	A0A1S3XTZ5	A0A1S4BSJ3	5'-adenylylsulfate reductase 3, chloroplastic-like.	5'-adenylylsulfate reductase 1, chloroplastic-like.	0.594
LOC107768720	SIR1	A0A1S3XTZ5	O82802	5'-adenylylsulfate reductase 3, chloroplastic-like.	Sulfite reductase 1 [ferredoxin], chloroplastic; Essential protein with sulfite reductase activity required in assimilatory sulfate reduction pathway during both primary and secondary metabolism and thus involved in development and growth.	0.994
LOC107781030	LOC107768720	A0A1S3YYI0	A0A1S3XTZ5	Sulfite oxidase-like.	5'-adenylylsulfate reductase 3, chloroplastic-like.	0.948
LOC107781030	LOC107785151	A0A1S3YYI0	A0A1S3ZBP2	Sulfite oxidase-like.	Nitrate reductase [NADH] 2-like.	0.948
LOC107781030	LOC107787200	A0A1S3YYI0	A0A1S3ZIR3	Sulfite oxidase-like.	Sulfite reductase 1 [ferredoxin], chloroplastic-like.	0.957
LOC107781030	LOC107787523	A0A1S3YYI0	A0A076L2G1	Sulfite oxidase-like.	Sulfurtransferase.	0.937
LOC107781030	LOC107787829	A0A1S3YYI0	A0A1S3ZKL5	Sulfite oxidase-like.	Sulfurtransferase.	0.937
LOC107781030	LOC107789753	A0A1S3YYI0	A0A1S3ZRY9	Sulfite oxidase-like.	5'-adenylylsulfate reductase 3, chloroplastic-like.	0.948
LOC107781030	LOC107799658	A0A1S3YYI0	A0A1S4AP83	Sulfite oxidase-like.	5'-adenylylsulfate reductase 3, chloroplastic-like isoform X1.	0.948
LOC107781030	LOC107801230	A0A1S3YYI0	A0A1S4ATW2	Sulfite oxidase-like.	5'-adenylylsulfate reductase 1, chloroplastic-like.	0.948
LOC107781030	LOC107811452	A0A1S3YYI0	A0A1S4BSJ3	Sulfite oxidase-like.	5'-adenylylsulfate reductase 1, chloroplastic-like.	0.948
LOC107781030	SIR1	A0A1S3YYI0	O82802	Sulfite oxidase-like.	Sulfite reductase 1 [ferredoxin], chloroplastic; Essential protein with sulfite reductase activity required in assimilatory sulfate reduction pathway during both primary and secondary metabolism and thus involved in development and growth.	0.961