LOC107780849 protein (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107780849

Cyclic pyranopterin monophosphate synthase, mitochondrial-like isoform X1. (397 aa)

Predicted Functional Partners:

LOC107760815

0.977

LOC107784730

0.977

LOC107805143

0.958

LOC107762931

0.933

LOC107812843

0.912

LOC107822561

0.912

LOC107759240

0.911

LOC107792598

0.911

LOC107780053

0.901

LOC107789601

0.901

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107759240	LOC107780053	A0A1S3WYB9	A0A1S3YUU8	GTP cyclohydrolase 1.	Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like.	0.950
LOC107759240	LOC107780849	A0A1S3WYB9	A0A1S3YYL7	GTP cyclohydrolase 1.	Cyclic pyranopterin monophosphate synthase, mitochondrial-like isoform X1.	0.911
LOC107759240	LOC107789601	A0A1S3WYB9	A0A1S3ZRE1	GTP cyclohydrolase 1.	Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like.	0.950
LOC107759240	LOC107792598	A0A1S3WYB9	A0A1S4A0V9	GTP cyclohydrolase 1.	GTP cyclohydrolase 1-like isoform X1.	0.900
LOC107760815	LOC107762931	A0A1S3X3D5	A0A1S3XA68	Cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial-like.	Molybdopterin synthase catalytic subunit-like.	0.993
LOC107760815	LOC107780849	A0A1S3X3D5	A0A1S3YYL7	Cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial-like.	Cyclic pyranopterin monophosphate synthase, mitochondrial-like isoform X1.	0.977
LOC107760815	LOC107784730	A0A1S3X3D5	A0A1S3ZAK9	Cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial-like.	Cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial-like isoform X1.	0.900
LOC107760815	LOC107805143	A0A1S3X3D5	A0A1S4B753	Cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial-like.	Molybdopterin synthase catalytic subunit; Catalytic subunit of the molybdopterin synthase complex, a complex that catalyzes the conversion of precursor Z into molybdopterin. Acts by mediating the incorporation of 2 sulfur atoms from thiocarboxylated MOCS2A into precursor Z to generate a dithiolene group.	0.993
LOC107760815	LOC107812843	A0A1S3X3D5	A0A1S4BXC5	Cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial-like.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.911
LOC107760815	LOC107822561	A0A1S3X3D5	A0A1S4CUD0	Cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial-like.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.911
LOC107762931	LOC107760815	A0A1S3XA68	A0A1S3X3D5	Molybdopterin synthase catalytic subunit-like.	Cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial-like.	0.993
LOC107762931	LOC107780849	A0A1S3XA68	A0A1S3YYL7	Molybdopterin synthase catalytic subunit-like.	Cyclic pyranopterin monophosphate synthase, mitochondrial-like isoform X1.	0.933
LOC107762931	LOC107784730	A0A1S3XA68	A0A1S3ZAK9	Molybdopterin synthase catalytic subunit-like.	Cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial-like isoform X1.	0.993
LOC107762931	LOC107805143	A0A1S3XA68	A0A1S4B753	Molybdopterin synthase catalytic subunit-like.	Molybdopterin synthase catalytic subunit; Catalytic subunit of the molybdopterin synthase complex, a complex that catalyzes the conversion of precursor Z into molybdopterin. Acts by mediating the incorporation of 2 sulfur atoms from thiocarboxylated MOCS2A into precursor Z to generate a dithiolene group.	0.900
LOC107762931	LOC107812843	A0A1S3XA68	A0A1S4BXC5	Molybdopterin synthase catalytic subunit-like.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.997
LOC107762931	LOC107822561	A0A1S3XA68	A0A1S4CUD0	Molybdopterin synthase catalytic subunit-like.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.997
LOC107780053	LOC107759240	A0A1S3YUU8	A0A1S3WYB9	Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like.	GTP cyclohydrolase 1.	0.950
LOC107780053	LOC107780849	A0A1S3YUU8	A0A1S3YYL7	Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like.	Cyclic pyranopterin monophosphate synthase, mitochondrial-like isoform X1.	0.901
LOC107780053	LOC107792598	A0A1S3YUU8	A0A1S4A0V9	Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like.	GTP cyclohydrolase 1-like isoform X1.	0.950
LOC107780849	LOC107759240	A0A1S3YYL7	A0A1S3WYB9	Cyclic pyranopterin monophosphate synthase, mitochondrial-like isoform X1.	GTP cyclohydrolase 1.	0.911