STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107782108Putative 3,4-dihydroxy-2-butanone kinase isoform X1. (594 aa)    
Predicted Functional Partners:
LOC107772270
DNA-damage-repair/toleration protein DRT102-like.
  
 
 0.879
LOC107830916
DNA-damage-repair/toleration protein DRT102-like.
  
 
 0.879
LOC107787799
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.878
LOC107806864
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.878
LOC107760560
Uncharacterized protein LOC107760560.
  
 
 0.842
LOC107813285
Uncharacterized protein LOC107813285 isoform X1.
  
 
 0.842
LOC107804179
Triosephosphate isomerase, cytosolic-like.
  
 
 0.813
LOC107760622
Triosephosphate isomerase, chloroplastic-like.
  
 
 0.813
LOC107764135
Triosephosphate isomerase, chloroplastic-like.
  
 
 0.813
LOC107764979
Triosephosphate isomerase, chloroplastic-like.
  
 
 0.813
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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