STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107782518Nuclear transcription factor Y subunit A-1-like. (156 aa)    
Predicted Functional Partners:
LOC107761037
Nuclear transcription factor Y subunit B-3-like.
   
 0.581
LOC107766832
Nuclear transcription factor Y subunit B-7-like.
   
 0.546
LOC107808081
Nuclear transcription factor Y subunit B-3-like.
   
 0.546
LOC107765408
Nuclear transcription factor Y subunit C-1-like.
    
 0.532
LOC107797519
Nuclear transcription factor Y subunit C-1-like.
    
 0.532
CIP2b
Nuclear transcription factor Y subunit C-9-like isoform X1.
    
 0.527
LOC107779351
Nuclear transcription factor Y subunit gamma-like isoform X1.
    
 0.527
LOC107784093
Nuclear transcription factor Y subunit C-1-like.
    
 0.527
LOC107786176
Nuclear transcription factor Y subunit C-4-like.
    
 0.527
LOC107801701
Nuclear transcription factor Y subunit C-9-like isoform X2.
    
 0.527
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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