STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107783583Ubiquitin carboxyl-terminal hydrolase 13-like. (196 aa)    
Predicted Functional Partners:
LOC107829526
RING-H2 finger protein ATL22-like.
  
 0.582
LOC107759937
Putative RING-H2 finger protein ATL21A.
  
 0.570
LOC107805666
26S proteasome non-ATPase regulatory subunit 7 homolog A.
   
 
  0.458
LOC107759321
Cullin-1; Belongs to the cullin family.
   
 0.452
LOC107768960
cullin-3A-like; Belongs to the cullin family.
   
 0.452
LOC107770609
Cullin-1 isoform X1; Belongs to the cullin family.
   
 0.452
LOC107778339
Cullin-1-like; Belongs to the cullin family.
   
 0.452
LOC107780807
cullin-3A-like; Belongs to the cullin family.
   
 0.452
LOC107783701
Cullin-1-like; Belongs to the cullin family.
   
 0.452
LOC107784182
Cullin-1-like isoform X1; Belongs to the cullin family.
   
 0.452
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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