STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107783581Ninja-family protein AFP3-like. (331 aa)    
Predicted Functional Partners:
LOC107760739
Protein ABSCISIC ACID-INSENSITIVE 5-like isoform X1.
    
 
 0.590
LOC107782669
Protein ABSCISIC ACID-INSENSITIVE 5-like isoform X1.
    
 
 0.590
LOC107794461
Transcription factor TCP4-like.
  
     0.505
LOC107786783
Transcription factor TCP4-like.
  
     0.504
LOC107781836
MACPF domain-containing protein At1g14780-like.
  
   
 0.502
LOC107777680
Transcription factor TCP4-like.
  
     0.497
LOC107784954
F-box protein PP2-B10-like.
  
     0.489
LOC107810839
MACPF domain-containing protein At1g14780.
  
   
 0.486
LOC107765641
F-box protein PP2-B10-like.
  
     0.484
LOC107807695
Transcription factor TCP4-like.
  
     0.481
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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