STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107783792Zinc finger matrin-type protein 2-like isoform X3. (199 aa)    
Predicted Functional Partners:
LOC107765381
Sm-like protein LSM7.
   
 0.969
LOC107808711
Microfibrillar-associated protein 1-like.
   
 0.967
LOC107817798
Microfibrillar-associated protein 1-like.
   
 0.967
LOC107761481
Sm-like protein LSM36B.
   
 0.962
LOC107824911
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
    
 0.962
LOC107774569
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.956
LOC107825164
Small nuclear ribonucleoprotein-associated protein.
   
 0.951
LOC107762664
Protein STABILIZED1-like.
   
 0.949
LOC107791059
Protein STABILIZED1-like.
   
 0.949
LOC107815942
Protein STABILIZED1.
   
 0.949
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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