STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107784894Uncharacterized protein LOC107784894. (298 aa)    
Predicted Functional Partners:
NtCENH3-2
Histone H3-like centromeric protein HTR12.
    
 0.569
LOC107822592
F-box protein At4g35733-like.
  
 
  0.530
LOC107772568
Uncharacterized protein LOC107772568.
  
 
  0.528
LOC107791173
F-box protein SKIP23-like.
  
     0.525
LOC107814235
Uncharacterized protein LOC107814235.
  
 
   0.524
LOC107783886
Structural maintenance of chromosomes protein.
    
 
 0.520
LOC107830590
Structural maintenance of chromosomes protein.
    
 
 0.520
LOC107822064
Uncharacterized protein LOC107822064.
  
     0.517
LOC107772113
F-box protein At2g26160-like.
  
     0.516
LOC107760118
Uncharacterized protein LOC107760118.
  
     0.515
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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