STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107784989Neoxanthin synthase, chloroplastic-like. (504 aa)    
Predicted Functional Partners:
LOC107763949
Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin.
   
 
 0.981
LOC107797654
Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin.
   
 
 0.980
LOC107780507
Violaxanthin de-epoxidase, chloroplastic-like; Belongs to the calycin superfamily. Lipocalin family.
     
 0.970
VDE1
Violaxanthin de-epoxidase, chloroplastic; Part of the xanthophyll (or violaxanthin) cycle for controlling the concentration of zeaxanthin in chloroplasts. Catalyzes the two-step mono de-epoxidation reaction. Stereospecific for all-trans xanthophylls. Zeaxanthin induces the dissipation of excitation energy in the chlorophyll of the light-harvesting protein complex of photosystem II; Belongs to the calycin superfamily. Lipocalin family.
     
 0.967
LOC107802057
Neoxanthin synthase, chloroplastic.
  
  
 
0.900
LOC107768490
Indole-3-acetaldehyde oxidase-like.
      
 0.807
LOC107784015
Abscisic-aldehyde oxidase-like.
      
 0.807
LOC107788517
Benzaldehyde dehydrogenase (NAD(+))-like.
      
 0.797
LOC107802049
Benzaldehyde dehydrogenase (NAD(+))-like.
      
 0.797
LOC107759354
Abscisic-aldehyde oxidase-like.
      
 0.794
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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