STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107785130Uncharacterized protein LOC107785130. (160 aa)    
Predicted Functional Partners:
LOC107799432
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.694
LOC107806428
Kirola-like.
  
     0.502
LOC107771584
Putative F-box protein At5g62660.
  
  
  0.500
LOC107786111
High mobility group B protein 6-like isoform X1.
  
     0.492
LOC107809756
Kirola-like.
  
     0.478
LOC107815310
Putative F-box protein At3g10430.
  
  
  0.469
LOC107765763
Uncharacterized protein LOC107765763.
  
     0.463
LOC107787734
F-box protein CPR30-like.
  
     0.462
LOC107780565
MLP-like protein 43.
  
     0.461
LOC107760488
Uncharacterized protein LOC107760488.
  
     0.457
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.