STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107785452Uncharacterized protein LOC107785452. (659 aa)    
Predicted Functional Partners:
LOC107762203
Signal peptidase complex catalytic subunit SEC11A-like.
   
 
 0.554
LOC107768262
Signal peptidase I.
   
 
 0.554
LOC107775698
Signal peptidase I.
   
 
 0.554
LOC107795920
Signal peptidase I.
   
 
 0.554
LOC107785213
E3 ubiquitin-protein ligase UPL4-like isoform X1.
      
 0.493
LOC107821932
E3 ubiquitin-protein ligase UPL4-like isoform X1.
      
 0.493
LOC107792660
Stromal processing peptidase, chloroplastic-like.
    
 
 0.418
LOC107818630
Stromal processing peptidase, chloroplastic-like.
    
 
 0.418
LOC107783853
Chloroplast processing peptidase-like isoform X1.
     
 0.414
LOC107795000
Chloroplast processing peptidase-like isoform X1.
     
 0.414
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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