STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107785600RING-type E3 ubiquitin transferase. (1039 aa)    
Predicted Functional Partners:
LOC107758950
Uncharacterized protein LOC107758950.
  
   
 0.575
LOC107789884
Uncharacterized protein LOC107789884.
  
   
 0.550
LOC107770448
Glutamate receptor 2.7-like.
  
     0.476
LOC107817760
Uncharacterized protein LOC107817760.
  
   
 0.444
LOC107771353
Uncharacterized WD repeat-containing protein alr3466-like.
      
 0.441
LOC107803978
Uncharacterized protein LOC107803978 isoform X1.
  
   
 0.441
LOC107761402
Uncharacterized protein LOC107761402 isoform X1.
  
   
 0.433
LOC107792019
UDP-glycosyltransferase 82A1-like.
  
     0.419
LOC107783400
Uncharacterized protein LOC107783400.
  
     0.418
LOC107765009
Uncharacterized protein LOC107765009.
  
   
 0.405
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.