STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107785483Arogenate dehydratase; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine. (396 aa)    
Predicted Functional Partners:
LOC107800597
Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase.
  
 
 0.986
LOC107801356
Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like.
  
 
 0.986
LOC107808211
Histidinol-phosphate aminotransferase, chloroplastic-like.
  
 
 0.972
LOC107823535
Histidinol-phosphate aminotransferase, chloroplastic.
  
 
 0.972
LOC107800931
Chorismate mutase.
  
 
 0.971
LOC107804390
Chorismate mutase 1, chloroplastic-like.
  
 
 0.971
LOC107788688
Chorismate mutase.
  
 
 0.967
LOC107805472
Chorismate mutase.
  
 
 0.967
LOC107804312
Tyrosine aminotransferase-like.
  
 
 0.943
LOC107819272
Tyrosine aminotransferase-like.
  
 
 0.943
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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