STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107786554ATP-dependent DNA helicase homolog RECG, chloroplastic-like isoform X1. (1001 aa)    
Predicted Functional Partners:
LOC107779177
Something about silencing protein 10-like isoform X1.
   
 0.982
LOC107811333
Something about silencing protein 10-like isoform X1.
   
 0.982
LOC107769877
LOW QUALITY PROTEIN: nucleolar protein 6-like.
   
 0.972
LOC107777093
Nucleolar protein 6.
   
 0.972
LOC107779317
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.966
LOC107791487
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.966
LOC107804672
Probable U3 small nucleolar RNA-associated protein 7.
   
 
 0.919
LOC107810614
Probable U3 small nucleolar RNA-associated protein 7.
   
 
 0.919
LOC107770815
LOW QUALITY PROTEIN: ATP-dependent RNA helicase DEAH13-like.
   
 0.915
LOC107795961
ATP-dependent RNA helicase DEAH13-like.
   
 0.915
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
Server load: low (18%) [HD]