STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107787850PAX3- and PAX7-binding protein 1-like isoform X1. (478 aa)    
Predicted Functional Partners:
LOC107780950
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2.
    
 0.867
LOC107786751
pre-mRNA-splicing factor syf2-like.
    
  0.728
LOC107815181
pre-mRNA-splicing factor syf2-like.
    
  0.728
LOC107773697
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.670
LOC107773747
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.670
LOC107770230
WD repeat-containing protein 25-like.
     
 0.626
LOC107823534
WD repeat-containing protein 25-like.
     
 0.626
LOC107826143
pre-mRNA-processing factor 17-like isoform X1.
     
 0.626
LOC107829018
pre-mRNA-processing factor 17-like isoform X1.
     
 0.626
LOC107760740
pre-mRNA-processing-splicing factor 8-like.
    
   0.563
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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