STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107788135Exopolygalacturonase-like. (400 aa)    
Predicted Functional Partners:
LOC107811187
Polygalacturonase-like.
  
  
 
0.703
LOC107825814
Polygalacturonase-like; Belongs to the glycosyl hydrolase 28 family.
  
  
 
0.693
LOC107810362
Polygalacturonase At1g48100-like.
  
  
 
0.682
LOC107773350
Polygalacturonase-2-like; Belongs to the glycosyl hydrolase 28 family.
  
  
 
0.680
LOC107802468
Probable polygalacturonase At3g15720.
  
  
 
0.680
LOC107761023
Probable polygalacturonase At3g15720.
  
  
 
0.679
LOC107767548
Probable polygalacturonase At3g15720 isoform X1.
  
  
 
0.679
LOC107771032
Probable polygalacturonase At3g15720.
  
  
 
0.679
LOC107776714
Probable polygalacturonase At3g15720.
  
  
 
0.678
LOC107770857
Probable polygalacturonase At3g15720 isoform X1.
  
  
 
0.677
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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