STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107788006GDSL esterase/lipase At2g38180-like. (185 aa)    
Predicted Functional Partners:
LOC107780413
Probable pyridoxal 5'-phosphate synthase subunit PDX2.
  
 0.971
Pdx2
Probable pyridoxal 5'-phosphate synthase subunit PDX2.
  
 0.971
LOC107764380
GMP synthase [glutamine-hydrolyzing]-like.
    
 0.651
LOC107818590
GMP synthase [glutamine-hydrolyzing]-like.
    
 0.651
LOC107772419
Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.
    
 0.611
LOC107825612
Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.
    
 0.611
LOC107792906
NADPH:adrenodoxin oxidoreductase, mitochondrial.
    
  0.546
LOC107824272
NADPH:adrenodoxin oxidoreductase, mitochondrial.
    
  0.546
LOC107765602
Gamma-glutamyl peptidase 5-like.
    
 0.544
LOC107772668
Gamma-glutamyl peptidase 3-like.
    
 0.544
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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